| date | stage | club1 | club2 | goals | |
| 2016-06-28 | Qualifying_Round_1 | Partizani_Tirana(Albania) | Slovan_Bratislava(Slovakia) | 0 | 0 | - |
| 2016-06-28 | Qualifying_Round_1 | St.Patricks_Athletic(Ireland) | Jeunesse_dEsch(Luxembourg) | 1 | 0 | - |
| 2016-06-28 | Qualifying_Round_1 | Rabotnicki_Skopje(North_Macedonia) | Buducnost_Podgorica(Montenegro) | 1 | 1 | - |
| 2016-06-28 | Qualifying_Round_1 | Kapaz_Ganja(Azerbaijan) | Dacia_Chisinau(Moldova) | 0 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | FC_Midtjylland(Denmark) | Suduva_Marijampole(Lithuania) | 1 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Hearts_FC(Scotland) | FCI_Tallinn(Estonia) | 2 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Connahs_Quay(Wales) | Stabaek_IF(Norway) | 0 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | FK_Ventspils(Latvia) | Vikingur(Faroe Islands) | 2 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Linfield_Belfast(Northern Ireland) | Cork_City(Ireland) | 0 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Levadia_Tallinn(Estonia) | HB_Torshavn(Faroe Islands) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Atlantas_Klaipeda(Lithuania) | HJK_Helsinki(Finland) | 0 | 2 | - |
| 2016-06-30 | Qualifying_Round_1 | IFK_Goteborg(Sweden) | Llandudno_FC(Wales) | 5 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | KR_Reykjavik(Iceland) | Glenavon(Northern Ireland) | 2 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Shamrock_Rovers(Ireland) | RoPS_Rovaniemi(Finland) | 0 | 2 | - |
| 2016-06-30 | Qualifying_Round_1 | Valur_Reykjavik(Iceland) | Brondby_IF(Denmark) | 1 | 4 | - |
| 2016-06-30 | Qualifying_Round_1 | Aberdeen(Scotland) | CS_Fola_Esch(Luxembourg) | 3 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | FK_Trakai(Lithuania) | Kalju_Nomme(Estonia) | 2 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Dinamo_Minsk(Belarus) | Spartaks_Jurmala(Latvia) | 2 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Breidablik(Iceland) | FK_Jelgava(Latvia) | 2 | 3 | - |
| 2016-06-30 | Qualifying_Round_1 | NSI_Runavik(Faroe Islands) | Shakhtior_Saligorsk(Belarus) | 0 | 2 | - |
| 2016-06-30 | Qualifying_Round_1 | AIK_Stockholm(Sweden) | Bala_Town(Wales) | 2 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Differdange_03(Luxembourg) | Cliftonville(Northern Ireland) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Odd_Grenland(Norway) | IFK_Mariehamn(Finland) | 2 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | NK_Domzale(Slovenia) | FC_Lusitanos(Andorra) | 3 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Bokelj_Kotor(Montenegro) | Vojvodina_Novi_Sad(Serbia) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | AEK_Larnaca(Cyprus) | Folgore(San-Marino) | 3 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Dila_Gori(Georgia) | Shirak_Gyumri(Armenia) | 1 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Videoton_Fehervar(Hungary) | Zarya_Balti(Moldova) | 3 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | La_Fiorita(San-Marino) | DVSC_Debrecen(Hungary) | 0 | 5 | - |
| 2016-06-30 | Qualifying_Round_1 | Balzan_FC(Malta) | Neftchi_Baku(Azerbaijan) | 0 | 2 | - |
| 2016-06-30 | Qualifying_Round_1 | Gabala_FK(Azerbaijan) | Samtredia(Georgia) | 5 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Banants_Yerevan(Armenia) | Omonia_Nicosia(Cyprus) | 0 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Zimbru_Chisinau(Moldova) | Chikhura_Sachkhere(Georgia) | 0 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Europa_FC(Gibraltar) | Pyunik_Yerevan(Armenia) | 2 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Maccabi_Tel-Aviv(Israel) | Nova_Gorica(Slovenia) | 3 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Teuta_Durres(Albania) | Kairat_Almaty(Kazakhstan) | 0 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | FC_Beroe_Stara_Zagora(Bulgaria) | Radnik_Bijeljina(Bosnia-Herzegovina) | 0 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | FK_Kukesi(Albania) | Rudar_Pljevlja(Montenegro) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Siroki_Brijeg(Bosnia-Herzegovina) | Birkirkara(Malta) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Slavia_Sofia(Bulgaria) | Zaglebie_Lubin(Poland) | 1 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Shkendija_Tetovo(North_Macedonia) | Cracovia_Krakow(Poland) | 2 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | UE_Santa_Coloma(Andorra) | Lokomotiva_Zagreb(Croatia) | 1 | 3 | - |
| 2016-06-30 | Qualifying_Round_1 | FC_Vaduz(Liechtenstein) | Sileks_Kratovo(North_Macedonia) | 3 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | Spartak_Trnava(Slovakia) | Hibernians_FC(Malta) | 3 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Sloboda_Tuzla(Bosnia-Herzegovina) | Beitar_Jerusalem(Israel) | 0 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Cukaricki_Belgrade(Serbia) | Ordabasy_Shymkent(Kazakhstan) | 3 | 0 | - |
| 2016-06-30 | Qualifying_Round_1 | Admira_Wacker(Austria) | Spartak_Myjava(Slovakia) | 1 | 1 | - |
| 2016-06-30 | Qualifying_Round_1 | FK_Aktobe(Kazakhstan) | MTK_Budapest(Hungary) | 1 | 1 | - |
| 2016-07-05 | Qualifying_Round_1 | Jeunesse_dEsch(Luxembourg) | St.Patricks_Athletic(Ireland) | 2 | 1 | - |
| 2016-07-05 | Qualifying_Round_1 | Chikhura_Sachkhere(Georgia) | Zimbru_Chisinau(Moldova) | 2 | 3 | - |
| 2016-07-05 | Qualifying_Round_1 | Birkirkara(Malta) | Siroki_Brijeg(Bosnia-Herzegovina) | 2 | 0 | - |
| 2016-07-06 | Qualifying_Round_1 | FCI_Tallinn(Estonia) | Hearts_FC(Scotland) | 2 | 4 | - |
| 2016-07-07 | Qualifying_Round_1 | Suduva_Marijampole(Lithuania) | FC_Midtjylland(Denmark) | 0 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Stabaek_IF(Norway) | Connahs_Quay(Wales) | 0 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Vikingur(Faroe Islands) | FK_Ventspils(Latvia) | 0 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Cork_City(Ireland) | Linfield_Belfast(Northern Ireland) | 1 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | HB_Torshavn(Faroe Islands) | Levadia_Tallinn(Estonia) | 0 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | HJK_Helsinki(Finland) | Atlantas_Klaipeda(Lithuania) | 1 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Llandudno_FC(Wales) | IFK_Goteborg(Sweden) | 1 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Glenavon(Northern Ireland) | KR_Reykjavik(Iceland) | 0 | 6 | - |
| 2016-07-07 | Qualifying_Round_1 | RoPS_Rovaniemi(Finland) | Shamrock_Rovers(Ireland) | 1 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Brondby_IF(Denmark) | Valur_Reykjavik(Iceland) | 6 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | CS_Fola_Esch(Luxembourg) | Aberdeen(Scotland) | 1 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Kalju_Nomme(Estonia) | FK_Trakai(Lithuania) | 4 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Spartaks_Jurmala(Latvia) | Dinamo_Minsk(Belarus) | 0 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | FK_Jelgava(Latvia) | Breidablik(Iceland) | 2 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Shakhtior_Saligorsk(Belarus) | NSI_Runavik(Faroe Islands) | 5 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Bala_Town(Wales) | AIK_Stockholm(Sweden) | 0 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Cliftonville(Northern Ireland) | Differdange_03(Luxembourg) | 2 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | IFK_Mariehamn(Finland) | Odd_Grenland(Norway) | 1 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | FC_Lusitanos(Andorra) | NK_Domzale(Slovenia) | 1 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Vojvodina_Novi_Sad(Serbia) | Bokelj_Kotor(Montenegro) | 5 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Folgore(San-Marino) | AEK_Larnaca(Cyprus) | 1 | 3 | - |
| 2016-07-07 | Qualifying_Round_1 | Shirak_Gyumri(Armenia) | Dila_Gori(Georgia) | 1 | 0 | pen-4:1 |
| 2016-07-07 | Qualifying_Round_1 | Zarya_Balti(Moldova) | Videoton_Fehervar(Hungary) | 2 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | DVSC_Debrecen(Hungary) | La_Fiorita(San-Marino) | 2 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Neftchi_Baku(Azerbaijan) | Balzan_FC(Malta) | 1 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Samtredia(Georgia) | Gabala_FK(Azerbaijan) | 2 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Omonia_Nicosia(Cyprus) | Banants_Yerevan(Armenia) | 4 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Pyunik_Yerevan(Armenia) | Europa_FC(Gibraltar) | 2 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Nova_Gorica(Slovenia) | Maccabi_Tel-Aviv(Israel) | 0 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Kairat_Almaty(Kazakhstan) | Teuta_Durres(Albania) | 5 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Radnik_Bijeljina(Bosnia-Herzegovina) | FC_Beroe_Stara_Zagora(Bulgaria) | 0 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Rudar_Pljevlja(Montenegro) | FK_Kukesi(Albania) | 0 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Zaglebie_Lubin(Poland) | Slavia_Sofia(Bulgaria) | 3 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Cracovia_Krakow(Poland) | Shkendija_Tetovo(North_Macedonia) | 1 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Lokomotiva_Zagreb(Croatia) | UE_Santa_Coloma(Andorra) | 4 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Sileks_Kratovo(North_Macedonia) | FC_Vaduz(Liechtenstein) | 1 | 2 | - |
| 2016-07-07 | Qualifying_Round_1 | Buducnost_Podgorica(Montenegro) | Rabotnicki_Skopje(North_Macedonia) | 1 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Hibernians_FC(Malta) | Spartak_Trnava(Slovakia) | 0 | 3 | - |
| 2016-07-07 | Qualifying_Round_1 | Dacia_Chisinau(Moldova) | Kapaz_Ganja(Azerbaijan) | 0 | 1 | - |
| 2016-07-07 | Qualifying_Round_1 | Beitar_Jerusalem(Israel) | Sloboda_Tuzla(Bosnia-Herzegovina) | 1 | 0 | - |
| 2016-07-07 | Qualifying_Round_1 | Ordabasy_Shymkent(Kazakhstan) | Cukaricki_Belgrade(Serbia) | 3 | 3 | - |
| 2016-07-07 | Qualifying_Round_1 | Spartak_Myjava(Slovakia) | Admira_Wacker(Austria) | 2 | 3 | - |
| 2016-07-07 | Qualifying_Round_1 | MTK_Budapest(Hungary) | FK_Aktobe(Kazakhstan) | 2 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Shirak_Gyumri(Armenia) | Spartak_Trnava(Slovakia) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Dinamo_Minsk(Belarus) | St.Patricks_Athletic(Ireland) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Partizan_Belgrade(Serbia) | Zaglebie_Lubin(Poland) | 0 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Vojvodina_Novi_Sad(Serbia) | Connahs_Quay(Wales) | 1 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Maccabi_Haifa(Israel) | Kalju_Nomme(Estonia) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Hibernian(Scotland) | Brondby_IF(Denmark) | 0 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Shakhtior_Saligorsk(Belarus) | NK_Domzale(Slovenia) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Austria_Wien(Austria) | FK_Kukesi(Albania) | 1 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | MTK_Budapest(Hungary) | Gabala_FK(Azerbaijan) | 1 | 2 | - |
| 2016-07-14 | Qualifying_Round_2 | FC_Beroe_Stara_Zagora(Bulgaria) | HJK_Helsinki(Finland) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | RoPS_Rovaniemi(Finland) | Lokomotiva_Zagreb(Croatia) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Neftchi_Baku(Azerbaijan) | Shkendija_Tetovo(North_Macedonia) | 0 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | KR_Reykjavik(Iceland) | Grasshoppers_Zurich(Switzerland) | 3 | 3 | - |
| 2016-07-14 | Qualifying_Round_2 | FC_Midtjylland(Denmark) | FC_Vaduz(Liechtenstein) | 3 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Zimbru_Chisinau(Moldova) | Osmanlispor(Turkey) | 2 | 2 | - |
| 2016-07-14 | Qualifying_Round_2 | PAS_Giannina(Greece) | Odd_Grenland(Norway) | 3 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Birkirkara(Malta) | Hearts_FC(Scotland) | 0 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | NK_Maribor(Slovenia) | Levski_Sofia(Bulgaria) | 0 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Piast_Gliwice(Poland) | IFK_Goteborg(Sweden) | 0 | 3 | - |
| 2016-07-14 | Qualifying_Round_2 | Slovan_Bratislava(Slovakia) | FK_Jelgava(Latvia) | 0 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Beitar_Jerusalem(Israel) | Omonia_Nicosia(Cyprus) | 1 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Admira_Wacker(Austria) | Kapaz_Ganja(Azerbaijan) | 1 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Aberdeen(Scotland) | FK_Ventspils(Latvia) | 3 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | BK_Hacken(Sweden) | Cork_City(Ireland) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Kairat_Almaty(Kazakhstan) | Maccabi_Tel-Aviv(Israel) | 1 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | DVSC_Debrecen(Hungary) | Torpedo_Zhodino(Belarus) | 1 | 2 | - |
| 2016-07-14 | Qualifying_Round_2 | CSMS_Iasi(Romania) | Hajduk_Split(Croatia) | 2 | 2 | - |
| 2016-07-14 | Qualifying_Round_2 | Videoton_Fehervar(Hungary) | Cukaricki_Belgrade(Serbia) | 2 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Cliftonville(Northern Ireland) | AEK_Larnaca(Cyprus) | 2 | 3 | - |
| 2016-07-14 | Qualifying_Round_2 | AIK_Stockholm(Sweden) | Europa_FC(Gibraltar) | 1 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Levadia_Tallinn(Estonia) | Slavia_Praha(Czech Republic) | 3 | 1 | - |
| 2016-07-14 | Qualifying_Round_2 | Racing_Genk(Belgium) | Buducnost_Podgorica(Montenegro) | 2 | 0 | - |
| 2016-07-14 | Qualifying_Round_2 | Sonderjyske(Denmark) | Stromsgodset_IF(Norway) | 2 | 1 | - |
| 2016-07-20 | Qualifying_Round_2 | Kapaz_Ganja(Azerbaijan) | Admira_Wacker(Austria) | 0 | 2 | - |
| 2016-07-21 | Qualifying_Round_2 | Spartak_Trnava(Slovakia) | Shirak_Gyumri(Armenia) | 2 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | St.Patricks_Athletic(Ireland) | Dinamo_Minsk(Belarus) | 0 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | Zaglebie_Lubin(Poland) | Partizan_Belgrade(Serbia) | 0 | 0 | pen-4:3 |
| 2016-07-21 | Qualifying_Round_2 | Connahs_Quay(Wales) | Vojvodina_Novi_Sad(Serbia) | 1 | 2 | - |
| 2016-07-21 | Qualifying_Round_2 | Kalju_Nomme(Estonia) | Maccabi_Haifa(Israel) | 1 | 1 | pen-5:3 |
| 2016-07-21 | Qualifying_Round_2 | Brondby_IF(Denmark) | Hibernian(Scotland) | 0 | 1 | pen-5:3 |
| 2016-07-21 | Qualifying_Round_2 | NK_Domzale(Slovenia) | Shakhtior_Saligorsk(Belarus) | 2 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | FK_Kukesi(Albania) | Austria_Wien(Austria) | 1 | 4 | - |
| 2016-07-21 | Qualifying_Round_2 | Gabala_FK(Azerbaijan) | MTK_Budapest(Hungary) | 2 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | HJK_Helsinki(Finland) | FC_Beroe_Stara_Zagora(Bulgaria) | 1 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Lokomotiva_Zagreb(Croatia) | RoPS_Rovaniemi(Finland) | 3 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Shkendija_Tetovo(North_Macedonia) | Neftchi_Baku(Azerbaijan) | 1 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Grasshoppers_Zurich(Switzerland) | KR_Reykjavik(Iceland) | 2 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | FC_Vaduz(Liechtenstein) | FC_Midtjylland(Denmark) | 2 | 2 | - |
| 2016-07-21 | Qualifying_Round_2 | Osmanlispor(Turkey) | Zimbru_Chisinau(Moldova) | 5 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Odd_Grenland(Norway) | PAS_Giannina(Greece) | 3 | 1 | extra_time |
| 2016-07-21 | Qualifying_Round_2 | Hearts_FC(Scotland) | Birkirkara(Malta) | 1 | 2 | - |
| 2016-07-21 | Qualifying_Round_2 | Levski_Sofia(Bulgaria) | NK_Maribor(Slovenia) | 1 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | IFK_Goteborg(Sweden) | Piast_Gliwice(Poland) | 0 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | FK_Jelgava(Latvia) | Slovan_Bratislava(Slovakia) | 3 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Omonia_Nicosia(Cyprus) | Beitar_Jerusalem(Israel) | 3 | 2 | - |
| 2016-07-21 | Qualifying_Round_2 | FK_Ventspils(Latvia) | Aberdeen(Scotland) | 0 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | Cork_City(Ireland) | BK_Hacken(Sweden) | 1 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Maccabi_Tel-Aviv(Israel) | Kairat_Almaty(Kazakhstan) | 2 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | Torpedo_Zhodino(Belarus) | DVSC_Debrecen(Hungary) | 1 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Hajduk_Split(Croatia) | CSMS_Iasi(Romania) | 2 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | Cukaricki_Belgrade(Serbia) | Videoton_Fehervar(Hungary) | 1 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | AEK_Larnaca(Cyprus) | Cliftonville(Northern Ireland) | 2 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Europa_FC(Gibraltar) | AIK_Stockholm(Sweden) | 0 | 1 | - |
| 2016-07-21 | Qualifying_Round_2 | Slavia_Praha(Czech Republic) | Levadia_Tallinn(Estonia) | 2 | 0 | - |
| 2016-07-21 | Qualifying_Round_2 | Buducnost_Podgorica(Montenegro) | Racing_Genk(Belgium) | 2 | 0 | pen-2:4 |
| 2016-07-21 | Qualifying_Round_2 | Stromsgodset_IF(Norway) | Sonderjyske(Denmark) | 2 | 2 | extra_time |
| 2016-07-28 | Qualifying_Round_3 | Lokomotiva_Zagreb(Croatia) | Vorskla_Poltava(Ukraine) | 0 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | AS_Saint-Etienne(France) | AEK_Athens(Greece) | 0 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | AEK_Larnaca(Cyprus) | Spartak(Russia) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Pandurii_Targu_Jiu(Romania) | Maccabi_Tel-Aviv(Israel) | 1 | 3 | - |
| 2016-07-28 | Qualifying_Round_3 | Vojvodina_Novi_Sad(Serbia) | Dinamo_Minsk(Belarus) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Zaglebie_Lubin(Poland) | Sonderjyske(Denmark) | 1 | 2 | - |
| 2016-07-28 | Qualifying_Round_3 | Austria_Wien(Austria) | Spartak_Trnava(Slovakia) | 0 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Hertha_BSC(Germany) | Brondby_IF(Denmark) | 1 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | NK_Domzale(Slovenia) | West_Ham_United(England) | 2 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | FC_Luzern(Switzerland) | Sassuolo(Italy) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Panathinaikos(Greece) | AIK_Stockholm(Sweden) | 1 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Istanbul_Basaksehir(Turkey) | NK_Rijeka(Croatia) | 0 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Videoton_Fehervar(Hungary) | FC_Midtjylland(Denmark) | 0 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Slavia_Praha(Czech Republic) | Rio_Ave(Portugal) | 0 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Osmanlispor(Turkey) | Kalju_Nomme(Estonia) | 1 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Herakles_Almelo(Netherlands) | FC_Arouca(Portugal) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | IFK_Goteborg(Sweden) | HJK_Helsinki(Finland) | 1 | 2 | - |
| 2016-07-28 | Qualifying_Round_3 | Birkirkara(Malta) | FK_Krasnodar(Russia) | 0 | 3 | - |
| 2016-07-28 | Qualifying_Round_3 | Aberdeen(Scotland) | NK_Maribor(Slovenia) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Torpedo_Zhodino(Belarus) | Rapid_Wien(Austria) | 0 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Admira_Wacker(Austria) | Slovan_Liberec(Czech Republic) | 1 | 2 | - |
| 2016-07-28 | Qualifying_Round_3 | AZ_Alkmaar(Netherlands) | PAS_Giannina(Greece) | 1 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Lille_OSC(France) | Gabala_FK(Azerbaijan) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | Racing_Genk(Belgium) | Cork_City(Ireland) | 1 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | AA_Gent(Belgium) | Viitorul_Constanta(Romania) | 5 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | FK_Jelgava(Latvia) | Beitar_Jerusalem(Israel) | 1 | 1 | - |
| 2016-07-28 | Qualifying_Round_3 | FC_Olexandriya(Ukraine) | Hajduk_Split(Croatia) | 0 | 3 | - |
| 2016-07-28 | Qualifying_Round_3 | Shkendija_Tetovo(North_Macedonia) | Mlada_Boleslav(Czech Republic) | 2 | 0 | - |
| 2016-07-28 | Qualifying_Round_3 | Grasshoppers_Zurich(Switzerland) | Apollon_Lemesos(Cyprus) | 2 | 1 | - |
| 2015-08-03 | Qualifying_Round_3 | Slovan_Liberec(Czech Republic) | Admira_Wacker(Austria) | 2 | 0 | - |
| 2016-08-04 | Qualifying_Round_3 | Vorskla_Poltava(Ukraine) | Lokomotiva_Zagreb(Croatia) | 2 | 3 | - |
| 2016-08-04 | Qualifying_Round_3 | AEK_Athens(Greece) | AS_Saint-Etienne(France) | 0 | 1 | - |
| 2016-08-04 | Qualifying_Round_3 | Spartak(Russia) | AEK_Larnaca(Cyprus) | 0 | 1 | - |
| 2016-08-04 | Qualifying_Round_3 | Maccabi_Tel-Aviv(Israel) | Pandurii_Targu_Jiu(Romania) | 2 | 1 | - |
| 2016-08-04 | Qualifying_Round_3 | Dinamo_Minsk(Belarus) | Vojvodina_Novi_Sad(Serbia) | 0 | 2 | - |