| date | stage | club1 | club2 | goals | |
| 2012-07-05 | Qualifying_Round_1 | Trans_Narva(Estonia) | Inter_Baku(Azerbaijan) | 0 | 5 | - |
| 2012-07-05 | Qualifying_Round_1 | MTK_Budapest(Hungary) | FK_Senica(Slovakia) | 1 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | KF_Tirana(Albania) | CS_Grevenmacher(Luxembourg) | 2 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Torpedo_Kutaisi(Georgia) | FK_Aktobe(Kazakhstan) | 1 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | FK_Borac_Banja_Luka(Bosnia-Herzegovina) | Celik_Niksic(Montenegro) | 2 | 2 | - |
| 2012-07-05 | Qualifying_Round_1 | FK_Baku(Azerbaijan) | Mura_Murska_Sobota(Slovenia) | 0 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | IF_Elfsborg(Sweden) | Floriana(Malta) | 8 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Renova_Dzepciste(North_Macedonia) | Libertas(San-Marino) | 4 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | FC_Santa_Coloma(Andorra) | NK_Osijek(Croatia) | 0 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | FK_Jagodina(Serbia) | Ordabasy_Shymkent(Kazakhstan) | 0 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | Differdange_03(Luxembourg) | NSI_Runavik(Faroe Islands) | 3 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Crusaders_Belfast(Northern Ireland) | Rosenborg_BK(Norway) | 0 | 3 | - |
| 2012-07-05 | Qualifying_Round_1 | Cefn_Druids(Wales) | MyPa-47(Finland) | 0 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Levadia_Tallinn(Estonia) | FK_Siauliai(Lithuania) | 1 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Bohemian_D(Ireland) | Thor_Akureyri(Iceland) | 0 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | FK_Sarajevo(Bosnia-Herzegovina) | Hibernians_FC(Malta) | 5 | 2 | - |
| 2012-07-05 | Qualifying_Round_1 | FC_Twente_Enschede(Netherlands) | UE_Santa_Coloma(Andorra) | 6 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Rudar_Pljevlja(Montenegro) | Shirak_Gyumri(Armenia) | 0 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | KS_Flamurtari_Vlore(Albania) | Honved_Budapest(Hungary) | 0 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | Dacia_Chisinau(Moldova) | NK_Celje(Slovenia) | 1 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Suduva_Marijampole(Lithuania) | Daugava_Daugavpils(Latvia) | 0 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | KuPS_Kuopio(Finland) | Llanelli_FC(Wales) | 2 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | Cliftonville(Northern Ireland) | Kalmar_FF(Sweden) | 1 | 0 | - |
| 2012-07-03 | Qualifying_Round_1 | Vikingur(Faroe Islands) | FC_Gomel(Belarus) | 0 | 6 | - |
| 2012-07-05 | Qualifying_Round_1 | FH_Hafnarfjardar(Iceland) | USV_Eschen-Mauren(Liechtenstein) | 2 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | Lech_Poznan(Poland) | Zhetysu_Taldykorgan(Kazakhstan) | 2 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Khazar_Lenkoran(Azerbaijan) | Kalju_Nomme(Estonia) | 2 | 2 | - |
| 2012-07-05 | Qualifying_Round_1 | Birkirkara(Malta) | Metalurg_Skopje(North_Macedonia) | 2 | 2 | - |
| 2012-07-05 | Qualifying_Round_1 | Pyunik_Yerevan(Armenia) | Zeta_Golubovci(Montenegro) | 0 | 3 | - |
| 2012-07-05 | Qualifying_Round_1 | Teuta_Durres(Albania) | Olimpi_Rustavi(Georgia) | 0 | 3 | - |
| 2012-07-05 | Qualifying_Round_1 | Olimpija_Ljubljana(Slovenia) | Jeunesse_dEsch(Luxembourg) | 3 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | EB_Streymur(Faroe Islands) | Gandzasar_Kapan(Armenia) | 3 | 1 | - |
| 2012-07-05 | Qualifying_Round_1 | St.Patricks_Athletic(Ireland) | IBV_Vestmannaeyjar(Iceland) | 1 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | La_Fiorita(San-Marino) | Metalurgs_Liepaja(Latvia) | 0 | 2 | - |
| 2012-07-05 | Qualifying_Round_1 | JJK_Jyvaskyla(Finland) | Stabaek_IF(Norway) | 2 | 0 | - |
| 2012-07-05 | Qualifying_Round_1 | Bangor_City(Wales) | Zimbru_Chisinau(Moldova) | 0 | 0 | - |
| 2012-07-03 | Qualifying_Round_1 | Shkendija_Tetovo(North_Macedonia) | Portadown(Northern Ireland) | 0 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | Inter_Baku(Azerbaijan) | Trans_Narva(Estonia) | 2 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | FK_Senica(Slovakia) | MTK_Budapest(Hungary) | 2 | 1 | - |
| 2012-07-10 | Qualifying_Round_1 | CS_Grevenmacher(Luxembourg) | KF_Tirana(Albania) | 0 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | FK_Aktobe(Kazakhstan) | Torpedo_Kutaisi(Georgia) | 1 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | Celik_Niksic(Montenegro) | FK_Borac_Banja_Luka(Bosnia-Herzegovina) | 1 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Mura_Murska_Sobota(Slovenia) | FK_Baku(Azerbaijan) | 2 | 0 | - |
| 2012-07-10 | Qualifying_Round_1 | Floriana(Malta) | IF_Elfsborg(Sweden) | 0 | 4 | - |
| 2012-07-12 | Qualifying_Round_1 | Libertas(San-Marino) | Renova_Dzepciste(North_Macedonia) | 0 | 4 | - |
| 2012-07-12 | Qualifying_Round_1 | NK_Osijek(Croatia) | FC_Santa_Coloma(Andorra) | 3 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Ordabasy_Shymkent(Kazakhstan) | FK_Jagodina(Serbia) | 0 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | NSI_Runavik(Faroe Islands) | Differdange_03(Luxembourg) | 0 | 3 | - |
| 2012-07-12 | Qualifying_Round_1 | Rosenborg_BK(Norway) | Crusaders_Belfast(Northern Ireland) | 1 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | MyPa-47(Finland) | Cefn_Druids(Wales) | 5 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | FK_Siauliai(Lithuania) | Levadia_Tallinn(Estonia) | 2 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Thor_Akureyri(Iceland) | Bohemian_D(Ireland) | 5 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Hibernians_FC(Malta) | FK_Sarajevo(Bosnia-Herzegovina) | 4 | 4 | - |
| 2012-07-12 | Qualifying_Round_1 | UE_Santa_Coloma(Andorra) | FC_Twente_Enschede(Netherlands) | 0 | 3 | - |
| 2012-07-12 | Qualifying_Round_1 | Shirak_Gyumri(Armenia) | Rudar_Pljevlja(Montenegro) | 1 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Honved_Budapest(Hungary) | KS_Flamurtari_Vlore(Albania) | 2 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | NK_Celje(Slovenia) | Dacia_Chisinau(Moldova) | 0 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Daugava_Daugavpils(Latvia) | Suduva_Marijampole(Lithuania) | 2 | 3 | - |
| 2012-07-12 | Qualifying_Round_1 | Llanelli_FC(Wales) | KuPS_Kuopio(Finland) | 1 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Kalmar_FF(Sweden) | Cliftonville(Northern Ireland) | 4 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | FC_Gomel(Belarus) | Vikingur(Faroe Islands) | 4 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | USV_Eschen-Mauren(Liechtenstein) | FH_Hafnarfjardar(Iceland) | 0 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Zhetysu_Taldykorgan(Kazakhstan) | Lech_Poznan(Poland) | 1 | 1 | - |
| 2012-07-10 | Qualifying_Round_1 | Kalju_Nomme(Estonia) | Khazar_Lenkoran(Azerbaijan) | 0 | 2 | - |
| 2012-07-12 | Qualifying_Round_1 | Metalurg_Skopje(North_Macedonia) | Birkirkara(Malta) | 0 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | Zeta_Golubovci(Montenegro) | Pyunik_Yerevan(Armenia) | 1 | 2 | - |
| 2012-07-12 | Qualifying_Round_1 | Olimpi_Rustavi(Georgia) | Teuta_Durres(Albania) | 6 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Jeunesse_dEsch(Luxembourg) | Olimpija_Ljubljana(Slovenia) | 0 | 3 | - |
| 2012-07-12 | Qualifying_Round_1 | Gandzasar_Kapan(Armenia) | EB_Streymur(Faroe Islands) | 2 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | IBV_Vestmannaeyjar(Iceland) | St.Patricks_Athletic(Ireland) | 2 | 1 | - |
| 2012-07-12 | Qualifying_Round_1 | Metalurgs_Liepaja(Latvia) | La_Fiorita(San-Marino) | 4 | 0 | - |
| 2012-07-12 | Qualifying_Round_1 | Stabaek_IF(Norway) | JJK_Jyvaskyla(Finland) | 3 | 2 | - |
| 2012-07-12 | Qualifying_Round_1 | Zimbru_Chisinau(Moldova) | Bangor_City(Wales) | 2 | 1 | - |
| 2012-07-10 | Qualifying_Round_1 | Portadown(Northern Ireland) | Shkendija_Tetovo(North_Macedonia) | 2 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Khazar_Lenkoran(Azerbaijan) | Lech_Poznan(Poland) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Eskisehirspor(Turkey) | St.Johnstone(Scotland) | 2 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Hajduk_Split(Croatia) | Skonto_Riga(Latvia) | 2 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | AIK_Stockholm(Sweden) | FH_Hafnarfjardar(Iceland) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Renova_Dzepciste(North_Macedonia) | FC_Gomel(Belarus) | 0 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Naftan_Novopolotsk(Belarus) | Red_Star_Belgrade(Serbia) | 3 | 4 | - |
| 2012-07-19 | Qualifying_Round_2 | Vojvodina_Novi_Sad(Serbia) | Suduva_Marijampole(Lithuania) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | JJK_Jyvaskyla(Finland) | Zeta_Golubovci(Montenegro) | 3 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Young_Boys(Switzerland) | Zimbru_Chisinau(Moldova) | 1 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Lokomotiv_Plovdiv(Bulgaria) | Vitesse_Arnhem(Netherlands) | 4 | 4 | - |
| 2012-07-19 | Qualifying_Round_2 | KF_Tirana(Albania) | Aalesunds_FK(Norway) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Metalurg_Donetsk(Ukraine) | Celik_Niksic(Montenegro) | 7 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Maccabi_Netanya(Israel) | KuPS_Kuopio(Finland) | 1 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Mlada_Boleslav(Czech Republic) | Thor_Akureyri(Iceland) | 3 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Levadia_Tallinn(Estonia) | Anorthosis_Famagusta(Cyprus) | 1 | 3 | - |
| 2012-07-19 | Qualifying_Round_2 | Milsami_Orhei(Moldova) | FK_Aktobe(Kazakhstan) | 4 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Slaven_Koprivnica(Croatia) | Portadown(Northern Ireland) | 6 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Servette_FC_Geneve(Switzerland) | Gandzasar_Kapan(Armenia) | 2 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | FC_Twente_Enschede(Netherlands) | Inter_Turku(Finland) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Zalgiris_Vilnius(Lithuania) | Admira_Wacker(Austria) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | NK_Osijek(Croatia) | Kalmar_FF(Sweden) | 1 | 3 | - |
| 2012-07-19 | Qualifying_Round_2 | Slovan_Bratislava(Slovakia) | Videoton_Fehervar(Hungary) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Rapid_Bucuresti(Romania) | MyPa-47(Finland) | 3 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Olimpi_Rustavi(Georgia) | Viktoria_Plzen(Czech Republic) | 1 | 3 | - |
| 2012-07-19 | Qualifying_Round_2 | Mura_Murska_Sobota(Slovenia) | CSKA_Sofia(Bulgaria) | 0 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Inter_Baku(Azerbaijan) | Asteras_Tripolis(Greece) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Differdange_03(Luxembourg) | AA_Gent(Belgium) | 0 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Anzhi_Makhachkala(Russia) | Honved_Budapest(Hungary) | 1 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Levski_Sofia(Bulgaria) | FK_Sarajevo(Bosnia-Herzegovina) | 1 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Metalurgs_Liepaja(Latvia) | Legia_Warsaw(Poland) | 2 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Shakhtior_Saligorsk(Belarus) | SV_Ried(Austria) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Bnei_Yehuda(Israel) | Shirak_Gyumri(Armenia) | 2 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Rosenborg_BK(Norway) | Ordabasy_Shymkent(Kazakhstan) | 2 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Spartak_Trnava(Slovakia) | Sligo_Rovers(Ireland) | 3 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | Dacia_Chisinau(Moldova) | IF_Elfsborg(Sweden) | 1 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Siroki_Brijeg(Bosnia-Herzegovina) | St.Patricks_Athletic(Ireland) | 1 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | APOEL_Nicosia(Cyprus) | FK_Senica(Slovakia) | 2 | 0 | - |
| 2012-07-19 | Qualifying_Round_2 | Ruch_Chorzow(Poland) | Metalurg_Skopje(North_Macedonia) | 3 | 1 | - |
| 2012-07-19 | Qualifying_Round_2 | AGF_Aarhus(Denmark) | Dila_Gori(Georgia) | 1 | 2 | - |
| 2012-07-19 | Qualifying_Round_2 | Olimpija_Ljubljana(Slovenia) | Tromso_IL(Norway) | 0 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Lech_Poznan(Poland) | Khazar_Lenkoran(Azerbaijan) | 1 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | St.Johnstone(Scotland) | Eskisehirspor(Turkey) | 1 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Skonto_Riga(Latvia) | Hajduk_Split(Croatia) | 1 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | FH_Hafnarfjardar(Iceland) | AIK_Stockholm(Sweden) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | FC_Gomel(Belarus) | Renova_Dzepciste(North_Macedonia) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Red_Star_Belgrade(Serbia) | Naftan_Novopolotsk(Belarus) | 3 | 3 | - |
| 2012-07-26 | Qualifying_Round_2 | Suduva_Marijampole(Lithuania) | Vojvodina_Novi_Sad(Serbia) | 0 | 4 | - |
| 2012-07-26 | Qualifying_Round_2 | Zeta_Golubovci(Montenegro) | JJK_Jyvaskyla(Finland) | 1 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Zimbru_Chisinau(Moldova) | Young_Boys(Switzerland) | 1 | 0 | pen-1:4 |
| 2012-07-26 | Qualifying_Round_2 | Vitesse_Arnhem(Netherlands) | Lokomotiv_Plovdiv(Bulgaria) | 3 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Aalesunds_FK(Norway) | KF_Tirana(Albania) | 5 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Celik_Niksic(Montenegro) | Metalurg_Donetsk(Ukraine) | 2 | 4 | - |
| 2012-07-26 | Qualifying_Round_2 | KuPS_Kuopio(Finland) | Maccabi_Netanya(Israel) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Thor_Akureyri(Iceland) | Mlada_Boleslav(Czech Republic) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Anorthosis_Famagusta(Cyprus) | Levadia_Tallinn(Estonia) | 3 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | FK_Aktobe(Kazakhstan) | Milsami_Orhei(Moldova) | 3 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Portadown(Northern Ireland) | Slaven_Koprivnica(Croatia) | 2 | 4 | - |
| 2012-07-26 | Qualifying_Round_2 | Gandzasar_Kapan(Armenia) | Servette_FC_Geneve(Switzerland) | 1 | 3 | - |
| 2012-07-26 | Qualifying_Round_2 | Inter_Turku(Finland) | FC_Twente_Enschede(Netherlands) | 0 | 5 | - |
| 2012-07-26 | Qualifying_Round_2 | Admira_Wacker(Austria) | Zalgiris_Vilnius(Lithuania) | 5 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Kalmar_FF(Sweden) | NK_Osijek(Croatia) | 3 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Videoton_Fehervar(Hungary) | Slovan_Bratislava(Slovakia) | 0 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | MyPa-47(Finland) | Rapid_Bucuresti(Romania) | 0 | 2 | - |
| 2012-07-26 | Qualifying_Round_2 | Viktoria_Plzen(Czech Republic) | Olimpi_Rustavi(Georgia) | 2 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | CSKA_Sofia(Bulgaria) | Mura_Murska_Sobota(Slovenia) | 1 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Asteras_Tripolis(Greece) | Inter_Baku(Azerbaijan) | 1 | 1 | pen-4:2 |
| 2012-07-26 | Qualifying_Round_2 | AA_Gent(Belgium) | Differdange_03(Luxembourg) | 3 | 2 | - |
| 2012-07-26 | Qualifying_Round_2 | Honved_Budapest(Hungary) | Anzhi_Makhachkala(Russia) | 0 | 4 | - |
| 2012-07-26 | Qualifying_Round_2 | FK_Sarajevo(Bosnia-Herzegovina) | Levski_Sofia(Bulgaria) | 3 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Legia_Warsaw(Poland) | Metalurgs_Liepaja(Latvia) | 5 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | SV_Ried(Austria) | Shakhtior_Saligorsk(Belarus) | 0 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | Shirak_Gyumri(Armenia) | Bnei_Yehuda(Israel) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Ordabasy_Shymkent(Kazakhstan) | Rosenborg_BK(Norway) | 1 | 2 | - |
| 2012-07-26 | Qualifying_Round_2 | Sligo_Rovers(Ireland) | Spartak_Trnava(Slovakia) | 1 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | IF_Elfsborg(Sweden) | Dacia_Chisinau(Moldova) | 2 | 0 | - |
| 2012-07-26 | Qualifying_Round_2 | St.Patricks_Athletic(Ireland) | Siroki_Brijeg(Bosnia-Herzegovina) | 2 | 1 | extra time |
| 2012-07-26 | Qualifying_Round_2 | FK_Senica(Slovakia) | APOEL_Nicosia(Cyprus) | 0 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Metalurg_Skopje(North_Macedonia) | Ruch_Chorzow(Poland) | 0 | 3 | - |
| 2012-07-26 | Qualifying_Round_2 | Dila_Gori(Georgia) | AGF_Aarhus(Denmark) | 3 | 1 | - |
| 2012-07-26 | Qualifying_Round_2 | Tromso_IL(Norway) | Olimpija_Ljubljana(Slovenia) | 1 | 0 | extra time |
| 2012-08-02 | Qualifying_Round_3 | Athletic_Bilbao(Spain) | Slaven_Koprivnica(Croatia) | 3 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Anzhi_Makhachkala(Russia) | Vitesse_Arnhem(Netherlands) | 2 | 0 | - |
| 2012-08-02 | Qualifying_Round_3 | Asteras_Tripolis(Greece) | Maritimo_Funchal(Portugal) | 1 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Heerenveen(Netherlands) | Rapid_Bucuresti(Romania) | 4 | 0 | - |
| 2012-08-02 | Qualifying_Round_3 | Ruch_Chorzow(Poland) | Viktoria_Plzen(Czech Republic) | 0 | 2 | - |
| 2012-08-02 | Qualifying_Round_3 | AC_Horsens(Denmark) | IF_Elfsborg(Sweden) | 1 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | APOEL_Nicosia(Cyprus) | Aalesunds_FK(Norway) | 2 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Hajduk_Split(Croatia) | Internazionale(Italy) | 0 | 3 | - |
| 2012-08-02 | Qualifying_Round_3 | Vojvodina_Novi_Sad(Serbia) | Rapid_Wien(Austria) | 2 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Racing_Genk(Belgium) | FK_Aktobe(Kazakhstan) | 2 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Tromso_IL(Norway) | Metalurg_Donetsk(Ukraine) | 1 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | FC_Twente_Enschede(Netherlands) | Mlada_Boleslav(Czech Republic) | 2 | 0 | - |
| 2012-08-02 | Qualifying_Round_3 | Bnei_Yehuda(Israel) | PAOK_Thessaloniki(Greece) | 0 | 2 | - |
| 2012-08-02 | Qualifying_Round_3 | Dila_Gori(Georgia) | Anorthosis_Famagusta(Cyprus) | 0 | 1 | - |
| 2012-08-02 | Qualifying_Round_3 | Videoton_Fehervar(Hungary) | AA_Gent(Belgium) | 1 | 0 | - |
| 2012-08-02 | Qualifying_Round_3 | AIK_Stockholm(Sweden) | Lech_Poznan(Poland) | 3 | 0 | - |
| 2012-08-02 | Qualifying_Round_3 | Eskisehirspor(Turkey) | Olympique_Marseille(France) | 1 | 1 | - |